Program blastn blastp blastx tblastn tblastx Database PBI_9_consensus.fa PBI_10_consensus.fa PBI_11_consensus.fa PBI_12_consensus.fa PBI_1_consensus.fa PBI_2_consensus.fa PBI_5_consensus.fa PBI_6_consensus.fa PBI_7_consensus.fa PBI_8_consensus.fa PBI_13_consensus.fa PBI_14_consensus.fa PBI_15_consensus.fa G21_consensus.fa G25_consensus.fa AC.Combine.assembly.v.1.0.fasta AC.H6.assembly.v.1.0.fasta AC.SP3B.assembly.v.1.0.fasta Annuum.v1.6.Total.fa (total Version - chromosome number) Annuum.v.1.6.scaffold.fa ( scaffolds number) Annuum.v.2.0.CDS.fa (Nucleotide) Annuum.v.2.0.PEP.fa (Protein) AlliumCepa_v1.0_CP.fa
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
